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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16398200_16399274_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16398200 - 16399274
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTAATTTAAAT
Flanking Amino Acid:
KVCLLDVQPHTVKHLRTYEF
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
83.3
0.75
0.7
76.2
32.3
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
60.2
0.4
1.6
77.79
37.9

Associated Gene:

Gene:
MPP7
Ensembl Gene ID:
ENSAPLG00000009795
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022249
16258588 - 16401016
142429
ENSAPLT00000018214
16266725 - 16401016
134292
ENSAPLT00000010247
16258588 - 16401016
142429