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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16399419_16400836_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16399419 - 16400836
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTGATCTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTCTGTGGACT
Flanking Amino Acid:
DDRGTAKPFTEEDFQEMIKS
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
78.2
32.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
67.7
0.4
1
66.9
39.1
Minor 5ss
46
-0.4
2.8
63.8
41.6
Minor BPS
49
0
2.2
77.02
39.5

Associated Gene:

Gene:
MPP7
Ensembl Gene ID:
ENSAPLG00000009795
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018214
16266725 - 16401016
134292
ENSAPLT00000010247
16258588 - 16401016
142429
ENSAPLT00000022249
16258588 - 16401016
142429