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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16459650_16461072_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16459650 - 16461072
Intron Length:
1423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AGGGTTTAAAAT
Flanking Amino Acid:
AGTLQECASEPSYRLAIRTE
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
83.6
0.76
0.8
82.1
34.6
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
44.4
-0.3
1.7
55.14
41.3

Associated Gene:

Gene:
ARMC4
Ensembl Gene ID:
ENSAPLG00000010322
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010774
16459584 - 16513956
54373