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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16461184_16461675_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16461184 - 16461675
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTGTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTGCATAATA
Flanking Amino Acid:
QMHCASAIFKCAEDKETRDL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.5
0.69
0.9
77
36.7
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
62.7
0.4
2
80.21
35.9

Associated Gene:

Gene:
ARMC4
Ensembl Gene ID:
ENSAPLG00000010322
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010774
16459584 - 16513956
54373