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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16465522_16473516_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16465522 - 16473516
Intron Length:
7995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCCAT
5'SS Class:
major
3'SS Sequence:
ATTCCTTTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTGATCA
Flanking Amino Acid:
GACATEPENMMIIDRLDGVR
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
70.9
40.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
72.1
0.5
1
69.1
36.4
Minor 5ss
42
-0.9
3.2
61.1
43.6
Minor BPS
65.4
0.48
1.7
79.93
36

Associated Gene:

Gene:
ARMC4
Ensembl Gene ID:
ENSAPLG00000010322
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010774
16459584 - 16513956
54373