About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16488653_16489228_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16488653 - 16489228
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTACCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATT
Flanking Amino Acid:
VPLLSKLANTNDDKLRRHLA
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.4
0.82
0.7
84.5
30
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
78.1
0.96
1
86.75
33.6

Associated Gene:

Gene:
ARMC4
Ensembl Gene ID:
ENSAPLG00000010322
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010774
16459584 - 16513956
54373