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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16535055_16541615_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16535055 - 16541615
Intron Length:
6561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTAAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCATTTTTAAGC
Flanking Amino Acid:
ALGSQMTLVQVSNWFANARR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.6
0.53
1
70.8
38.6
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
60.4
0.3
1.6
65.92
40.3

Associated Gene:

Gene:
MKX
Ensembl Gene ID:
ENSAPLG00000010674
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011116
16534571 - 16575837
41267