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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16621122_16621737_R

Intron Information:

Intron Rank:
148822
Intron Class:
major
Intron Phase:
Intron Coordinates:
16621122 - 16621737
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TACAATCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAACAT
U12 Branch Point Sequence:
ACTACATGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
63.2
0.33
1.1
69.6
35.7
Major PPT
74.3
0.55
0.9
69.8
40.8
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
49.5
-0
1.7
60.92
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027542
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029708
16618248 - 16621755
3508