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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16640059_16641549_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16640059 - 16641549
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TAACATTTGACT
Flanking Amino Acid:
FARKHSMLFIEASAKTCDGV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.5
21.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
80.9
0.7
0.8
72.3
37.8
Minor 5ss
40.5
-1.1
2.8
52
45.2
Minor BPS
56.7
0.29
1.5
71.5
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029809
16639793 - 16654372
14580