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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16641617_16641693_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16641617 - 16641693
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACTGA
5'SS Class:
major
3'SS Sequence:
CTGTGTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTTTGTTAACA
Flanking Amino Acid:
KMLVGNKIDKENREVDRNEG
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.3
39.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.1
0.66
0.9
72.2
37.9
Minor 5ss
42.6
-0.8
3
56.2
47.9
Minor BPS
67.9
0.56
2
81.19
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029809
16639793 - 16654372
14580