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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16641813_16643734_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16641813 - 16643734
Intron Length:
1922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGCTATCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TGTGACTTAATA
Flanking Amino Acid:
YYRGAQGVILVYDVTRRDTF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
80.5
0.69
0.9
77.1
36.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
65
0.47
1.6
73.11
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029809
16639793 - 16654372
14580