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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16643808_16645769_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16643808 - 16645769
Intron Length:
1962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AATGGCTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ACTTTCTGAATG
Flanking Amino Acid:
DGNKAKLAIWDTAGQERFRT
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
85.2
32.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.9
0.49
1
66.4
44.3
Minor 5ss
38.2
-1.3
3.4
49.9
46.4
Minor BPS
60.7
0.2
1.5
61.99
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029809
16639793 - 16654372
14580