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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16645832_16652009_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16645832 - 16652009
Intron Length:
6178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ATTTGAAGAACT
Flanking Amino Acid:
TFDPELAATIGVDFKVKTIS
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
83.4
0.75
0.7
77.7
31.1
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
45.8
-0.2
2.3
74.01
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029809
16639793 - 16654372
14580