About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16652066_16654048_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16652066 - 16654048
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCATCCCTATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
TTTTCCTTCATC
Flanking Amino Acid:
IIGESGVGKSSLLLRFTDDT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
75
0.62
1.1
77.2
36
Major PPT
72.6
0.51
0.9
70.9
34.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
76.7
0.82
1.6
86.11
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029634
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029809
16639793 - 16654372
14580