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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16669092_16675443_R

Intron Information:

Intron Rank:
141333
Intron Class:
major
Intron Phase:
Intron Coordinates:
16669092 - 16675443
Intron Length:
6352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1.1
76.2
39.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
88.2
0.86
0.6
87.7
22.4
Minor 5ss
40
-1.1
3.3
58.7
45.8
Minor BPS
60.9
0.32
1.7
73.79
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023382
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033867
16668500 - 16676616
8117