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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16675533_16676173_R

Intron Information:

Intron Rank:
141334
Intron Class:
major
Intron Phase:
Intron Coordinates:
16675533 - 16676173
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGCGTGCA
5'SS Class:
major
3'SS Sequence:
CTATATCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
64.3
35.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.5
0.66
0.9
72.7
37.1
Minor 5ss
28.9
-2.4
3.3
36.2
41
Minor BPS
60.9
0.42
1.6
77.43
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023382
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033867
16668500 - 16676616
8117