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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16828312_16830372_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16828312 - 16830372
Intron Length:
2061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
AAAATATTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TATTCTTTAAAA
Flanking Amino Acid:
TITFSIVSCLRLSCIRNNVW
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
68.6
0.42
1
63.4
46.2
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
77.6
0.86
1.2
82.02
32.3

Associated Gene:

Gene:
PTCHD3
Ensembl Gene ID:
ENSAPLG00000013648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014212
16827366 - 16835483
8118