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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16830519_16833909_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16830519 - 16833909
Intron Length:
3391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAC
U12 Branch Point Sequence:
GCAGGGTTAACT
Flanking Amino Acid:
TVANAPFLILGVGVDDMFIM
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
56.7
0.17
1.3
61.4
43.2
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
44.4
-0.3
2.4
60.91
48.4

Associated Gene:

Gene:
PTCHD3
Ensembl Gene ID:
ENSAPLG00000013648
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014212
16827366 - 16835483
8118