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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16837768_16839238_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16837768 - 16839238
Intron Length:
1471

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
ATTTGCTTATTT
Flanking Amino Acid:
QIVLEGKKLELA*
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.5
35
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.8
0.63
1
77.5
35.7
Minor 5ss
39
-1.2
3.1
47.6
42.4
Minor BPS
61.2
0.43
2
82.08
39.9

Associated Gene:

Gene:
YME1L1
Ensembl Gene ID:
ENSAPLG00000012942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013558
16837759 - 16857617
19859