Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16840610_16841246_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16840610 - 16841246

Intron Length:

637

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGCGCAT

5'SS Class:

major

3'SS Sequence:

TTTGTTTGTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGCAAT

U12 Branch Point Sequence:

GTGGCAAAAAGA

Flanking Amino Acid:

MVTRFGMSEKLGVMTYTDTG

Intron Amino Acid Position:

647

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.3

60.5

45.8

Major BPS

61.8

0.29

1.4

70.7

42.6

Major PPT

81.1

0.7

0.9

81.2

36.5

Minor 5ss

36.6

-1.5

3.7

55.3

48.9

Minor BPS

36.5

-1

2.2

45.81

43.2

Associated Gene:

Gene:

YME1L1

Ensembl Gene ID:

ENSAPLG00000012942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028416

16839230 - 16858018

18789

ENSAPLT00000013558

16837759 - 16857617

19859