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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16843554_16843916_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16843554 - 16843916
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAC
U12 Branch Point Sequence:
TGGTCCCTAATG
Flanking Amino Acid:
WYLNKIKYDQSVDPEIIARG
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
67
0.42
1.1
57.7
39
Major PPT
82.8
0.74
0.7
77.2
24.9
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
60.7
0.2
1.8
64.95
43

Associated Gene:

Gene:
YME1L1
Ensembl Gene ID:
ENSAPLG00000012942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028416
16839230 - 16858018
18789
ENSAPLT00000013558
16837759 - 16857617
19859