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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16844600_16844814_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16844600 - 16844814
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATATC
5'SS Class:
major
3'SS Sequence:
TTTTTTCATACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
TINQLLAEMDGFKPNEGVVI
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
78.6
35.9
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.8
85
28.8
Minor 5ss
39.2
-1.2
2.9
46
42.5
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
YME1L1
Ensembl Gene ID:
ENSAPLG00000012942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028416
16839230 - 16858018
18789
ENSAPLT00000013558
16837759 - 16857617
19859