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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1684525_1685818_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1684525 - 1685818
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGATCTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGTATATGATCT
Flanking Amino Acid:
VESRKKTGKKGQAALYGKRR
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
75.8
0.64
1
65.8
41
Major PPT
76.5
0.6
0.9
74.2
36.3
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
45.9
-0.2
1.9
67.69
42.4

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030423
1510299 - 1709755
199457
ENSAPLT00000046273
1510299 - 1709755
199457
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457
ENSAPLT00000015679
1510299 - 1709755
199457
ENSAPLT00000038362
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457