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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16846261_16847620_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16846261 - 16847620
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTCTTATTT
Flanking Amino Acid:
FTVLGGKLPKGILLVGPPGT
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.8
0.83
0.7
85.8
28.4
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
68.2
0.65
1.5
84.89
35.8

Associated Gene:

Gene:
YME1L1
Ensembl Gene ID:
ENSAPLG00000012942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013558
16837759 - 16857617
19859
ENSAPLT00000028416
16839230 - 16858018
18789