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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16847712_16848733_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16847712 - 16848733
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TGTTTATTGATA
Flanking Amino Acid:
KNVTFEHVKGVEEAKQELQE
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
75.2
0.57
0.9
70.6
34.8
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
60.5
0.32
1.6
71.66
33.9

Associated Gene:

Gene:
YME1L1
Ensembl Gene ID:
ENSAPLG00000012942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028416
16839230 - 16858018
18789
ENSAPLT00000013558
16837759 - 16857617
19859