Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16849700_16849792_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16849700 - 16849792

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TATTTTAAAATT

Flanking Amino Acid:

KAQVFLQKTLDSLRRSRLLS

Intron Amino Acid Position:

229

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

79.1

37.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

95.4

1.02

0.5

91.9

18.9

Minor 5ss

42.4

-0.8

2.9

59.1

45.4

Minor BPS

49.9

0.07

1.9

73.1

38.4

Associated Gene:

Gene:

YME1L1

Ensembl Gene ID:

ENSAPLG00000012942

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013558

16837759 - 16857617

19859

ENSAPLT00000028416

16839230 - 16858018

18789