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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16855798_16857587_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16855798 - 16857587
Intron Length:
1790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AAATCCTTAATT
Flanking Amino Acid:
MFSFSTVQPQATVPLSHLIN
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.8
0.67
0.9
75.9
37.9
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
80.6
1.04
1
84.95
34.9

Associated Gene:

Gene:
YME1L1
Ensembl Gene ID:
ENSAPLG00000012942
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028416
16839230 - 16858018
18789
ENSAPLT00000013558
16837759 - 16857617
19859