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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16865985_16866311_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16865985 - 16866311
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
TCCTGTTTGATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
GCTCCATTAACT
Flanking Amino Acid:
LLSLISSLGFYTPVGMKMPI
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
81.8
31
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
70.6
0.46
1
67.8
37.8
Minor 5ss
40
-1.1
2.9
57.3
41.2
Minor BPS
67
0.61
1.6
79.89
41.4

Associated Gene:

Gene:
MASTL
Ensembl Gene ID:
ENSAPLG00000012632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013152
16862357 - 16876550
14194
ENSAPLT00000024944
16864031 - 16876550
12520
ENSAPLT00000023037
16861323 - 16876550
15228
ENSAPLT00000019103
16861323 - 16876550
15228