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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16866448_16866856_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16866448 - 16866856
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATCTATATAT
Flanking Amino Acid:
TPLSAKLFKTGLDTSPLTPV
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
80.9
0.69
1
80.1
32.3
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
48.3
-0
1.9
69.73
40.7

Associated Gene:

Gene:
MASTL
Ensembl Gene ID:
ENSAPLG00000012632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024944
16864031 - 16876550
12520
ENSAPLT00000023037
16861323 - 16876550
15228
ENSAPLT00000019103
16861323 - 16876550
15228
ENSAPLT00000013152
16862357 - 16876550
14194