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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16867030_16868213_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16867030 - 16868213
Intron Length:
1184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGACT
5'SS Class:
major
3'SS Sequence:
TGCTCATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTCTTGATA
Flanking Amino Acid:
SSPRWERGVEQTEDELLSTK
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
76.1
39.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
79.5
0.66
0.9
73.2
36.1
Minor 5ss
30.3
-2.3
3
41.4
44.7
Minor BPS
80.4
0.95
0.9
85.58
26.2

Associated Gene:

Gene:
MASTL
Ensembl Gene ID:
ENSAPLG00000012632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024944
16864031 - 16876550
12520
ENSAPLT00000023037
16861323 - 16876550
15228
ENSAPLT00000019103
16861323 - 16876550
15228
ENSAPLT00000013152
16862357 - 16876550
14194