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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16874352_16874452_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16874352 - 16874452
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGT
5'SS Class:
major
3'SS Sequence:
TCTATCTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ACTTACTTATCT
Flanking Amino Acid:
TQVFQNILKRDIPWPEGEEK
Intron Amino Acid Position:
774

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
71.6
40.9
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.8
0.72
0.8
77.1
31.4
Minor 5ss
45.6
-0.5
2.9
65.6
45.5
Minor BPS
63
0.48
1.8
79.42
42.4

Associated Gene:

Gene:
MASTL
Ensembl Gene ID:
ENSAPLG00000012632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023037
16861323 - 16876550
15228
ENSAPLT00000019103
16861323 - 16876550
15228
ENSAPLT00000013152
16862357 - 16876550
14194
ENSAPLT00000024944
16864031 - 16876550
12520