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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16874555_16876392_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16874555 - 16876392
Intron Length:
1838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
ACCTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AAACCTTTATTT
Flanking Amino Acid:
IDSAKRAGLKELKPHPLFHG
Intron Amino Acid Position:
808

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
83
36.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
80.3
0.68
0.8
77.5
34.8
Minor 5ss
37.6
-1.4
2.7
45.2
42.4
Minor BPS
53.3
0.18
1.5
66.01
38.6

Associated Gene:

Gene:
MASTL
Ensembl Gene ID:
ENSAPLG00000012632
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024944
16864031 - 16876550
12520
ENSAPLT00000023037
16861323 - 16876550
15228
ENSAPLT00000019103
16861323 - 16876550
15228
ENSAPLT00000013152
16862357 - 16876550
14194