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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16882500_16886778_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16882500 - 16886778
Intron Length:
4279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTACATTAACG
Flanking Amino Acid:
SNYQPDSSVKKTELRIDDLA
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
87.8
0.85
0.6
81.5
30.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
65.2
0.34
1.7
70.79
41.5

Associated Gene:

Gene:
ACBD5
Ensembl Gene ID:
ENSAPLG00000012250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044278
16882045 - 16910543
28499