Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16886492_16886778_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16886492 - 16886778

Intron Length:

287

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAACAC

5'SS Class:

strong_major

3'SS Sequence:

CCGTTTTCCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

AGATTGCTAACT

Flanking Amino Acid:

SNYQPDSSVKKPSWWPFEIS

Intron Amino Acid Position:

464

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.4

36.7

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

73.8

0.54

0.8

72.9

Minor 5ss

31.6

-2.1

3.2

41.7

Minor BPS

47.2

-0.1

2.3

68.59

41.8

Associated Gene:

Gene:

ACBD5

Ensembl Gene ID:

ENSAPLG00000012250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018937

16882264 - 16920920

38657

ENSAPLT00000046831

16882264 - 16910543

28280