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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1688663_1689747_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1688663 - 1689747
Intron Length:
1085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTTCTGACT
Flanking Amino Acid:
VLVHWGFFPDSYDTWVHANE
Intron Amino Acid Position:
278

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
74.1
0.54
0.8
74.5
29.1
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
66.3
0.59
1.6
87.21
31.8

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015679
1510299 - 1709755
199457
ENSAPLT00000030423
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000038362
1510299 - 1709755
199457
ENSAPLT00000017626
1510299 - 1709755
199457
ENSAPLT00000038184
1510299 - 1709755
199457
ENSAPLT00000017188
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457
ENSAPLT00000046273
1510299 - 1709755
199457