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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16892662_16893658_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16892662 - 16893658
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
EEKELQQNGKEYKSVKTESA
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
87.9
29.3
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
45.7
-0.5
2.8
59
45.5
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
ACBD5
Ensembl Gene ID:
ENSAPLG00000012250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018937
16882264 - 16920920
38657
ENSAPLT00000012803
16882487 - 16910543
28057
ENSAPLT00000046831
16882264 - 16910543
28280
ENSAPLT00000044278
16882045 - 16910543
28499
ENSAPLT00000031079
16882350 - 16910543
28194