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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16893797_16903778_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16893797 - 16903778
Intron Length:
9982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
AATGTTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTCTTTGAAT
Flanking Amino Acid:
RMEKVSKYLEDLSNVMNSTP
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.4
0.5
0.9
70.2
40.4
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
71
0.74
1.4
83.94
37.1

Associated Gene:

Gene:
ACBD5
Ensembl Gene ID:
ENSAPLG00000012250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018937
16882264 - 16920920
38657
ENSAPLT00000012803
16882487 - 16910543
28057
ENSAPLT00000044278
16882045 - 16910543
28499
ENSAPLT00000031079
16882350 - 16910543
28194