Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16893797_16903942_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16893797 - 16903942

Intron Length:

10146

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTCGGACA

5'SS Class:

major

3'SS Sequence:

AATGTTTTCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTCTCTTTGAAT

Flanking Amino Acid:

KKNRGSDLTSDLSNVMNSTP

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.2

64.6

Major BPS

90.4

0.7

90.2

19.3

Major PPT

72.4

0.5

0.9

70.2

40.4

Minor 5ss

27.8

-2.5

32.9

41.6

Minor BPS

0.74

1.4

83.94

37.1

Associated Gene:

Gene:

ACBD5

Ensembl Gene ID:

ENSAPLG00000012250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046831

16882264 - 16910543

28280