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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16907949_16909235_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16907949 - 16909235
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTTTT
5'SS Class:
major
3'SS Sequence:
CTTTGCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AGATTCTGAAGA
Flanking Amino Acid:
GFWDPIGRYKWDAWSALGDM
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
80.5
34.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
75.5
0.57
0.8
73.7
31.4
Minor 5ss
56.4
0.22
2.5
72.7
39.1
Minor BPS
50.3
0.01
1.7
60.18
39.2

Associated Gene:

Gene:
ACBD5
Ensembl Gene ID:
ENSAPLG00000012250
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044278
16882045 - 16910543
28499
ENSAPLT00000031079
16882350 - 16910543
28194
ENSAPLT00000018937
16882264 - 16920920
38657
ENSAPLT00000012803
16882487 - 16910543
28057
ENSAPLT00000046831
16882264 - 16910543
28280