Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16909357_16910367_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16909357 - 16910367

Intron Length:

1011

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGAGCG

5'SS Class:

major

3'SS Sequence:

ATGCTTTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TACAACTTAATT

Flanking Amino Acid:

VKVIQSLPKNGSFQPTNEMM

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

59.9

39.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

66.3

0.37

0.9

60.1

Minor 5ss

25.8

-2.8

3.1

31.6

42.2

Minor BPS

63.4

0.5

1.6

75.1

41.5

Associated Gene:

Gene:

ACBD5

Ensembl Gene ID:

ENSAPLG00000012250

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044278

16882045 - 16910543

28499

ENSAPLT00000031079

16882350 - 16910543

28194

ENSAPLT00000018937

16882264 - 16920920

38657

ENSAPLT00000012803

16882487 - 16910543

28057

ENSAPLT00000046831

16882264 - 16910543

28280