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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1692149_1694950_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1692149 - 1694950
Intron Length:
2802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTGTCTTTCATT
Flanking Amino Acid:
KLKDIVKRHQGTVTEEKSKA
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
85.2
32.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.3
0.57
0.8
69
30.9
Minor 5ss
44.2
-0.6
3.3
66.9
44.4
Minor BPS
66.9
0.61
1.7
83.09
39.1

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017626
1510299 - 1709755
199457
ENSAPLT00000038184
1510299 - 1709755
199457
ENSAPLT00000046273
1510299 - 1709755
199457
ENSAPLT00000017188
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457
ENSAPLT00000015679
1510299 - 1709755
199457
ENSAPLT00000030423
1510299 - 1709755
199457
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000038362
1510299 - 1709755
199457