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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16937225_16954248_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16937225 - 16954248
Intron Length:
17024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAACAT
U12 Branch Point Sequence:
TTTTGCTTTACA
Flanking Amino Acid:
MFALISVCEAPDKRKALEE
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.8
1.03
0.7
89.6
22.7
Major BPS
50.9
0.02
1.1
59
36.1
Major PPT
89.7
0.89
0.7
84
31
Minor 5ss
32.9
-1.9
2.7
43.2
43.8
Minor BPS
67.1
0.53
2.1
83.52
37

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039690
16937037 - 17007586
70550
ENSAPLT00000020616
16937037 - 17007586
70550