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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1695044_1695937_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1695044 - 1695937
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCTTATTTAATT
Flanking Amino Acid:
FMNIEKTLVQNNCLSRPTIY
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.03
0.9
81.2
36
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.5
0.62
0.7
70
30.9
Minor 5ss
23.4
-3.1
3.7
33.7
41.9
Minor BPS
72.5
0.78
1.4
84.41
36.8

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015679
1510299 - 1709755
199457
ENSAPLT00000030423
1510299 - 1709755
199457
ENSAPLT00000045670
1510299 - 1709755
199457
ENSAPLT00000025065
1510299 - 1709755
199457
ENSAPLT00000038362
1510299 - 1709755
199457
ENSAPLT00000017626
1510299 - 1709755
199457
ENSAPLT00000038184
1510299 - 1709755
199457
ENSAPLT00000017188
1510299 - 1709755
199457
ENSAPLT00000035479
1510299 - 1709755
199457
ENSAPLT00000046273
1510299 - 1709755
199457