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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16954417_16975301_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16954417 - 16975301
Intron Length:
20885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATTTATGGAATT
Flanking Amino Acid:
MESSINHISQGGKVSLHEPP
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.5
0.75
0.8
78.2
34.9
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
46.9
-0.1
2.2
72
39.2

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041398
16931895 - 17007586
75692
ENSAPLT00000012332
16931895 - 17007586
75692