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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16954417_16977711_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16954417 - 16977711
Intron Length:
23295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTGTTTTCAATC
Flanking Amino Acid:
MESSINHISQTVDIHKEKVA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.9
0.49
1
64.2
41.7
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
61.5
0.34
1.5
69.53
36.7

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024780
16931895 - 17007586
75692
ENSAPLT00000020616
16937037 - 17007586
70550
ENSAPLT00000039702
16931895 - 17007586
75692
ENSAPLT00000039690
16937037 - 17007586
70550