Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1696020 - 1699618

Intron Length:

3599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTCAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

AAYKYKNEQGWRRFDLQNPS

Intron Amino Acid Position:

173

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.7

0.8

77.5

29.8

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

SMARCC1

Ensembl Gene ID:

ENSAPLG00000014937

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025065

1510299 - 1709755

199457

ENSAPLT00000038362

1510299 - 1709755

199457

ENSAPLT00000017626

1510299 - 1709755

199457

ENSAPLT00000038184

1510299 - 1709755

199457

ENSAPLT00000017188

1510299 - 1709755

199457

ENSAPLT00000035479

1510299 - 1709755

199457

ENSAPLT00000046273

1510299 - 1709755

199457

ENSAPLT00000015679

1510299 - 1709755

199457

ENSAPLT00000030423

1510299 - 1709755

199457

ENSAPLT00000045670

1510299 - 1709755

199457

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1696020_1699618_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: