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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16977889_16989277_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16977889 - 16989277
Intron Length:
11389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCCCTTATTT
Flanking Amino Acid:
VLDDVGHGVKHGNNQPARTG
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.8
0.74
0.8
80.6
29.8
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
74
0.83
1.5
89.57
34.9

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020616
16937037 - 17007586
70550
ENSAPLT00000039702
16931895 - 17007586
75692
ENSAPLT00000024780
16931895 - 17007586
75692