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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16988524_16989277_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16988524 - 16989277
Intron Length:
754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTCCCTTATTT
Flanking Amino Acid:
GHGVKWLKAKHGNNQPARTG
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.8
0.74
0.8
80.6
29.8
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
74
0.83
1.5
89.57
34.9

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039690
16937037 - 17007586
70550
ENSAPLT00000012332
16931895 - 17007586
75692
ENSAPLT00000041398
16931895 - 17007586
75692