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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16992898_16995138_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16992898 - 16995138
Intron Length:
2241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGCAC
5'SS Class:
major
3'SS Sequence:
CTCTGTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TAATACTCAATG
Flanking Amino Acid:
ASLNQRPRTHSGSSGGSGSR
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
57.3
42
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
84.7
0.78
0.8
78.9
33.2
Minor 5ss
29
-2.4
3.6
40.5
46
Minor BPS
52.8
-0
1.8
59.29
42

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012332
16931895 - 17007586
75692
ENSAPLT00000039702
16931895 - 17007586
75692
ENSAPLT00000039690
16937037 - 17007586
70550
ENSAPLT00000024780
16931895 - 17007586
75692
ENSAPLT00000020616
16937037 - 17007586
70550
ENSAPLT00000041398
16931895 - 17007586
75692