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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16996496_17001203_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16996496 - 17001203
Intron Length:
4708

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
GCGTTGCTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTGAC
U12 Branch Point Sequence:
TTCCCCCGAAAT
Flanking Amino Acid:
PPPLPMGSLIVSIAPPPPPM
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
63.8
0.31
1.1
55
44.7
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
49.4
0.04
1.9
73
42.9

Associated Gene:

Gene:
ABI1
Ensembl Gene ID:
ENSAPLG00000011841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024780
16931895 - 17007586
75692